The characteristics of the bottom boundary layer are reported from a Lake Michigan field study carried out in deep hypolimnetic waters (55 m depth) during the stratified period (June–September 2012). The sandy substrate at the measurement site was densely covered with invasive quagga mussels (mean size: 1.6 cm; mean density: 10,000 mussels m⁻²). The measurements reveal a sluggish, compact bottom boundary layer, with flow speeds at 1 mab less than 5 cm s⁻¹ for most of the period, and a dominance of subinertial energy. A downwelling event caused the largest currents observed during the deployment (10 cm s⁻¹ at 1 mab) and a logarithmic layer thickness of 15 m. In spite of the weak flow, logarithmic profile fitting carried out on high-resolution, near-bed velocity profiles show consistent logarithmic structure (90% of profiles). Flow was dominated by subinertial energy but strong modified by near-inertial waves. Fitted drag coefficients and roughness values are C_d1m = 0.004 and Z₀ = 0.12 cm, respectively. These values increase with decreasing flow speed, but approach canonical values for 1 mab flow speeds exceeding 4 cm s⁻¹. The estimated vertical extent of the logarithmic region was compact, with a mean value of 1.2 m and temporal variation that is reasonably described by Ekman scaling, 0.07 u*/f, and the estimated overall Ekman layer thickness was generally less than 10 m. Near-bed dissipation rates inferred from the law of the wall were 10⁻⁸−10⁻⁷ W kg⁻¹ and turbulent diffusivities were 10⁻⁴−10⁻³ m²s⁻¹.